Yan Zhuang


About me

My research interests are optimal transport learning for biomedical imaging analysis and medical computer vision. In addition, I am very interested in smart and connected health. I got my PhD from Imaging and Data Science Lab under Prof. Gustavo Rohde guidance, University of Virginia. Previously, I was a research associate @ ESC Lab under Prof. Wenyao Xu guidance from 2014-2015, University at Buffalo. I got my M.S. degree from University at Buffalo.

Google Scholar, Startup advised.


Latest news

  • Papers submitted to IEEE TIP, TBME, and Frontiers in Neurology - 03/2022
  • U.S. patent filed - 02/2022
  • Paper accepted at ICASSP2022 - 01/2022
  • Paper submitted to Pattern Recognition. - 01/2022
  • Paper accepted at Nature Communication. - 12/2021

Projects


Optimal Transport (Wasserstein Metric) Learning and Biomedical Imaging Analysis

Preprint1, Preprint2 , IEEE ICASSP'22 , Nature Communications
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Left panel: few-shot illumination-invariant face recognition using sliced-Wasserstein metric; middle panel: image classification (top) and time-series classification (bottom) with limited training data using optimal transport; right panel: brain hemorrhage segmentation and image-based single-cell platelet aggregates profiling.

We develop several subspace learning models in sliced-Wasserstein space by leveraging certain mathematical properties of the Radon Cumulative Distribution Transform (R-CDT) to perform data-efficient learning, such as illumination-invariant face recognition and image classification with limited training data.

In addition, we collaborate with scholars from University of Tokyo to perform image-based single-cell platelet aggregates analysis that is associated with COVID-19. A pilot paper is published in Nature Communications. We also collaborate with physicians and researchers from School of Medicine University of Virginia to develop a UNet-based segmentation framework for brain hemorrhage CT scans.


Medical Computer Vision based Neurological Deficits Identification

IEEE TBME, IEEE JBHI, IEEE&ACM CHASE, IEEE BHI2019, BHI2021, ISBI2018, AAN Annual Meeting 2018, International Stroke Conference 2018, 2019, 2021
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Left panel: Image-based facial weakness detection; middle panel: Video-based facial weakness detection; right panel: Abnormal eye movement assessment.

We develop an automated video-based system that can detect common neurological deficits in stroke such as facial weakness using computer vision and biomedical imaging analysis. One of our studies regarding facial weakness detection showed that the system was able to achieve the equal performance to paramedics. Significance of this project is that it provides a proof-of-concept study, showing that such video-based facial weakness diagnosis system could offer clinical assistance to non-neurologists such as paramedics to increase the coverage of neurological prehospital care. Besides, we also perform webcam-based abnormal eye movement quantification and investigate to detect limb drift based human action analysis. This interdisciplinary research is conducted in a close and strong collaboration with physicians and researchers at School of Medicine and University of Virginia Medical Center.


Smart and Connected Health

IEEE BSN'15, ACM MobiHoc'15, IEEE TBioCAS, IEEE TII, BSN'16, IEEE RWW'16, ACM Mobicom'17 & MobiSys'18
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Left panel: Doppler radar based systems for sleep monitoring and vital sign estimation; middle panel: GaitTracker project; right panel: SmartInsole project.

My past research is in the realm of AI-enabled unobtrusive sensing and wearable devices for healthcare, including sensor fusion, microcontroller programming, biomedical signal analysis, and software prototyping. I built several cyber-physical systems that are capable of performing sleep monitoring, cardiac motion characterization for authentication, air quality monitoring, and gait parameters estimation.


Publications


Please check my Google Scholar for the latest publications.

Journal papers
  • [J11] Chad M. Aldridge, Mark McDonald, Yan Zhuang, Iris L. Lin, Haydon Pitchford, William A. Darlymple, Gustavo K. Rohde, and Andrew M. Southerland. "Human versus Machine Learning Based Detection of Facial Weakness Using Video Analysis.". submitted to Frontiers in Neurology.
  • [J10] Mohamed Abul Hassan Ameen, Chad M. Aldridge, Yan Zhuang, Xuwang Yin, Timothy McMurry, Gustavo K. Rohde, and Andrew M. Southerland. "Investigating the Need for Calibration to Track Eye Movements: A Feasibility Study.". submitted to Frontiers in Neurology.
  • [J9] Yan Zhuang, Shiying Li, Mohammad Shifat-E-Rabbi, Abu Hasnat Mohammad Rubaiyat, Xuwang Yin, and Gustavo K. Rohde. "Local Sliced-Wasserstein Feature Sets for Illumination-invariant Face Recognition." arXiv preprint arXiv:2201.02980 (2022).
  • [J8] Mohammad Shifat-E-Rabbi, Yan Zhuang, Shiying Li, Abu Hasnat Mohammad Rubaiyat, Xuwang Yin, and Gustavo K. Rohde. "Invariance encoding in sliced-Wasserstein space for image classification with limited training data." arXiv preprint arXiv:2201.02980 (2022). submitted to Pattern Recognition.
  • [J7] Yuqi Zhou, Masako Nishikawa, Hiroshi Kanno, Tinghui Xiao, [and others, including Yan Zhuang] "Massive image-based single-cell profiling reveals high levels of circulating platelet aggregates in patients with COVID-19." Nature Communications 12.1 (2021): 1-12.
  • [J6] Yan Zhuang, Mark McDonald, Chad Aldridge, Mohamed Abul Hassan, Omar Uribe, Daniel Arteaga, Andrew Southerland, Gustavo Rohde. "Video-based Facial Weakness Analysis." IEEE Transactions on Biomedical Engineering (2021).
  • [J5] Yan Zhuang, Mark McDonald, Omar Uribe, Xuwang Yin, Dhyey Parikh, Andrew M. Southerland, and Gustavo Rohde. "Facial Weakness Analysis and Quantification Of Static Images." IEEE Journal of Biomedical and Health Informatics (2020).
  • [J4] Yan Zhuang, Lei Yu, Haiying Shen, William Kolodzey, Nematollah Iri, Gregori Caulfield, and Shenghua He. "Data collection with accuracy-aware congestion control in sensor networks." IEEE Transactions on Mobile Computing 18, no. 5 (2018): 1068-1082.
  • [J3] Feng Lin, Yan Zhuang, Chen Song, Aosen Wang, Yiran Li, Changzhan Gu, Changzhi Li, and Wenyao Xu, "SleepSense: a Noncontact and Cost-effective Sleep Monitoring System", IEEE Transactions on Biomedical Circuits and Systems (TBioCAS), vol. 11, issue 1, pp 189 - 202, 2017.
  • [J2] Yingxiao Wu, Yan Zhuang, Feng Lin, Xi Long, and Wenyao Xu, "Human Gender Classification: A Review", International Journal of Biometrics (IJBM), vol. 8, issue 3/4, pp 275 - 300, 2016
  • [J1] Feng Lin, Aosen Wang, Yan Zhuang, Machiko R. Tomita, and Wenyao Xu, "Smart Insole: a Wearable Sensor Device for Unobtrusive Gait Monitoring in Daily Life", IEEE Transactions on Industrial Informatics (TII), vol. 12, issue 6, pp 2281 - 2291, 2016.
Conference papers
  • [C11] Abu Hasnat Mohammad Rubaiyat, Mohammad Shifat-E-Rabbi, Yan Zhuang, Shiying Li, and Gustavo K. Rohde. "Nearest Subspace Search in The Signed Cumulative Distribution Transform Space for 1D Signal Classification." 2022 IEEE The International Conference on Acoustics, Speech, & Signal Processing (ICASSP).
  • [C10] Mohamed Hassan, Yin Xuwang*, Yan Zhuang*, Chad M. Aldridge, Timothy McMurry, Andrew M. Southerland, and Gustavo K. Rohde. "A Pilot Study on Video-based Eye Movement Assessment of the NeuroEye Examination." 2021 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI). * indicates equal contribution.
  • [C9] Yan Zhuang, Mohamed Hassan, Chad M. Aldridge, Yin Xuwang, Timothy McMurry, Andrew M. Southerland, and Gustavo K. Rohde. "Poster: A Pilot Study On Camera-based Neurological Deficit Detection." In 2020 IEEE/ACM International Conference on Connected Health: Applications, Systems and Engineering Technologies (CHASE), pp. 16-17. IEEE, 2020.
  • [C8] Yan Zhuang, Omar Uribe, Mark Mcdonald, Xuwang Yin, Dhyey Parikh, Andrew Southerland, and Gustavo Rohde, "F-DIT-V: An Automated Video Classification Tool for Facial Weakness Detection." 2019 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI). IEEE, 2019.
  • [C7] Yan Zhuang, Omar Uribe, Mark Mcdonald, Iris Lin, Daniel Arteaga, William Dalrymple, Bradford Worrall, Andrew Southerland, and Gustavo Rohde,“Pathological facial weakness detection using computational image analysis,” 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI), IEEE, 2018.
  • [C6] Feng Lin, Chen Song, Yan Zhuang, Wenyao Xu, Changzhi Li, and Kui Ren,"Cardiac Scan: a Non-contact and Continuous Authentication System", The 23rd ACM Annual International Conference on Mobile Computing and Networking (MobiCom'17), Snowbird, Utah, October, 2017.
  • [C5] Wang, Haoyu, Jiaqi Gong, Yan Zhuang, Haiying Shen, and John Lach. "Healthedge: Task scheduling for edge computing with health emergency and human behavior consideration in smart homes." In 2017 IEEE International Conference on Big Data (Big Data), pp. 1213-1222. IEEE, 2017.
  • [C4] Yan Zhuang, Jiaqi Gong, D. Casey Kerrigan, Bradford C. Bennett, John Lach, and Shawn Russell. "Gait tracker shoe for accurate step-by-step determination of gait parameters." In Wearable and Implantable Body Sensor Networks (BSN), 2016 IEEE 13th International Conference on, pp. 13-18. IEEE, 2016.
  • [C3] Yan Zhuang, Chen Song, Feng Lin, Yiran Li, Changzhi Li, and Wenyao Xu, "On the Feasibility of Non-contact Cardiac Motion Sensing for Emerging Heart-based Biometrics", 2016 IEEE Radio and Wireless Week (RWW 16), Austin, Texas, January 2016
  • [C2] Yan Zhuang, Chen Song, Aosen Wang, Feng Lin, Yiran Li, Changzhan Gu, Changzhi Li, and Wenyao Xu, "Non-invasive Sleep Event Recognition Using An Electromagnetic Probe", IEEE 12th Annual Body Sensor Networks Conference (BSN 15), Boston, Massachusetts, June 2015.
  • [C1] Yan Zhuang, Feng Lin, Eun-Hye Yoo, and Wenyao Xu. "Airsense: A portable context-sensing device for personal air quality monitoring." In Proceedings of the 2015 Workshop on Pervasive Wireless Healthcare, pp. 17-22. 2015.
Poster, abstract, and patent
  • [A5] Comparison of Calibration vs Non-calibration Techniques in the Automated Capture Of Eye Movement Data: Initial Validation of the ROADIE Device (4324) Andrew Southerland, Mohamed Hassan, Chad Aldridge, Yan Zhuang, Timothy McMurry, Gustavo Rohde, Neurology Apr 2021, 96 (15 Supplement) 4324;.
  • [A4] Mark Mcdonald, Omar Uribe, Yan Zhuang, Iris Lin, Daniel Arteaga, William Dalrymple, Bradford Worrall,Gustavo Rohde and Andrew Southerland. Comparison of Human and Machine Learning Based Facial Weakness Detection. Stroke. 2019 Feb.
  • [A3] Omar Uribe, Mark Mcdonald, Yan Zhuang, Iris Lin, Daniel Arteaga, William Dalrymple, Bradford Worrall, Andrew Southerland, and Gustavo Rohde. Automated Detection of Facial Weakness Using Machine Learning. Stroke. 2018 Feb.
  • [A2] Zhuolin Yang, Zhengxiong Li, Yan Zhuang, and Wenyao Xu. "Exploring an Inclusive User Interface through Respiration." In Proceedings of the 16th Annual International Conference on Mobile Systems, Applications, and Services, pp. 522-522. ACM, 2018.
  • [A1] "System and method for automated detection of neurological deficits." U.S. Patent 15/733,244.


Awards and professional activities:


  • University of Virginia Engineering Research Symposium 2021 Finalist, NSF BHI2019 Travel Award, ACM MobiHoc2015 Student Travel Grant
  • Reviewer: ACM IMWUT, IEEE JBHI, IEEE Transactions on Services Computing, INFOCOM, IEEE&ACM CHASE, IEEE Access, ML4H: Machine Learning 4 Health

  • Funding:

    • American Heart Association
    • UVa-Coulter Research Partnership
    Last update 05/2022
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