Imaging and Data Science Lab

Nocte dieque incubando:

Teaching:

Introduction to numerical methods for engineers (undergraduate): course page
Transport methods in signal processing and machine learning (graduate): course page.
Mathematical imaging and signal processing (undergraduate, graduate): course page.

Software:

PyTransKit : signal and image processing and machine learning with optimal transport.
Cell Organizer : Software for creating cell models from microscopy images
Transport/LP distances for signal and image analysis, JMIV, 2021: paper , code
Neural network integral geometry, 2020 paper , code
Cell image classification review with software, 2020 paper , code
Matlab code, including GUI interface, for segmenting cells and nuclei from microscopy images with accurate borders. The work is described in Chen et al's, Cytometry al, pp. 495-507, 2013 paper (html) , as well as, ISBI 2012, pp. 768-771, (html) . Code . Start by reading "Tutorial.pdf" file.
Nuclear segmentation in pathology images: JPI paper , software

Latest news:

(01/24) End-to-end Signal Classification in Signed Cumulative Distribution Space, in Press IEEE PAMI, arxiv preprint , Software: PyTransKit .
(01/24) Data driven system identification using the signed cumulative distribution transform. In press, Computer Methods in Applied Mechanics and Engineering, arxiv preprint , Software: PyTransKit .
(12/23) Dr. Ivan Medri joins our lab.
(11/23) Professor Rohde delivered a one week mini course in optimal transport and applications at the University of Campinas (UNICAMP), SP, Brazil.
(07/23) Professor Rohde gave a keynote talk at MIDL 2023/Vanderbilt: video .
(05/23) Congratulations to Dr. Shifat-E-Rabbi for successfully defending his Ph.D. thesis at BME/UVA!
(04/23) Congratulations to Dr. Rubaiyat for successfully defending his Ph.D. thesis at ECE/UVA!
(01/23) Dr. Duy Thai joins our lab
(11/22) Congratulations to Dr. Yin for successfully defending his Ph.D. thesis at ECE/UVA!
(10/22) Professor Rohde delivered a talk at UMD Fall Fourier Talks. video
(06/22) Mini course, Fields Institute, Toronto, Canada. Transport transforms for signal processing and machine learning: lecture 1 , lecture 2 , lecture 3 , plenary .
(05/22) Congratulations to Dr. Zhuang for successfully defending his Ph.D. thesis at ECE/UVA!
(03/22) The signed cumulative distribution transform (SCDT) for signal analysis and classification. Paper, AIMS FoDS, Software: PyTransKit .
(03/22) Illumination invariant face recognition using optimal transport Preprint , code , PyTransKit .
(12/21) Massive image-based single-cell profiling reveals high levels of circulating platelet aggregates in patients with COVID-19. Nature Communications Paper , press , press , press .
(10/21) Conversation with Dr. Rohde on the topic of digital imaging in pathology: Interview